Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing

dc.creatorValliyodan, Babu
dc.creatorBrown, Anne V.
dc.creatorWang, Juexin
dc.creatorPatil, Gunvant (TTU)
dc.creatorLiu, Yang
dc.creatorOtyama, Paul I.
dc.creatorNelson, Rex T.
dc.creatorVuong, Tri
dc.creatorSong, Qijian
dc.creatorMusket, Theresa A.
dc.creatorWagner, Ruth
dc.creatorMarri, Pradeep
dc.creatorReddy, Sam
dc.creatorSessions, Allen
dc.creatorWu, Xiaolei
dc.creatorGrant, David
dc.creatorBayer, Philipp
dc.creatorRoorkiwal, Manish
dc.creatorVarshney, Rajeev K.
dc.creatorLiu, Xin
dc.creatorEdwards, David
dc.creatorXu, Dong
dc.creatorJoshi, Trupti
dc.creatorCannon, Steven B.
dc.creatorNguyen, Henry T.
dc.descriptionThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit The Creative Commons Public Domain Dedication waiver applies to the metadata files associated with this article.en_US
dc.description.abstractWe report characteristics of soybean genetic diversity and structure from the resequencing of 481 diverse soybean accessions, comprising 52 wild (Glycine soja) selections and 429 cultivated (Glycine max) varieties (landraces and elites). This data was used to identify 7.8 million SNPs, to predict SNP effects relative to genic regions, and to identify the genetic structure, relationships, and linkage disequilibrium. We found evidence of distinct, mostly independent selection of lineages by particular geographic location. Among cultivated varieties, we identified numerous highly conserved regions, suggesting selection during domestication. Comparisons of these accessions against the whole U.S. germplasm genotyped with the SoySNP50K iSelect BeadChip revealed that over 95% of the re-sequenced accessions have a high similarity to their SoySNP50K counterparts. Probable errors in seed source or genotype tracking were also identified in approximately 5% of the accessions.en_US
dc.identifier.citationValliyodan, B., Brown, A.V., Wang, J. et al. Genetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencing. Sci Data 8, 50 (2021).
dc.subjectPlant Breedingen_US
dc.subjectPlant Sciencesen_US
dc.titleGenetic variation among 481 diverse soybean accessions, inferred from genomic re-sequencingen_US


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